New Data Added to Oncomine

14 AUG 2007
ONCOMINE™ DATA BULLETIN

Compendia Bioscience announces the addition of 23 highly curated data sets — representing over a thousand microarray experiments — to the Oncomine database. Because sample data is critical to understanding gene expression data, we work very hard to ensure that all available sample data is captured in Oncomine. As a result of these efforts nearly half of the new studies in this release contain sample data that is not available by direct download from public repositories — but is available in Oncomine.

Bladder
Blaveri_Bladder_2 Bladder cancer outcome and subtype classification by gene expression.
Non-Affymetrix	Samples: 93	Analyses: 6	PMID: 15930339

Dyrskjot_Bladder_4 A molecular signature in superficial bladder carcinoma predicts clinical outcome.
Non-Affymetrix	Samples: 29	Analyses: 3	PMID: 15930337

Breast
Turashvili_Breast Novel markers for differentiation of lobular and ductal invasive breast carcinomas by laser microdissection and microarray analysis
Affymetrix	Samples: 30	Analyses: 39	PMID: 17389037

Cell Line
An_CellLine The latency-associated nuclear antigen of Kaposi`s sarcoma-associated herpesvirus modulates cellular gene expression and protects lymphoid cells from p16 INK4A-induced cell cycle arrest.
Affymetrix	Samples: 23	Analyses: 0	PMID: 15525642

Boyer_CellLine Pharmacogenomic identification of novel determinants of response to chemotherapy in colon cancer.
Affymetrix	Samples: 45	Analyses: 4	PMID: 16510598

Gyorffy_CellLine_2 Prediction of doxorubicin sensitivity in breast tumors based on gene expression profiles of drug-resistant cell lines correlates with patient survival.
Non-Affymetrix	Samples: 13	Analyses: 6	PMID: 16044152

Hernandez-Vargas_CellLine Transcriptional profiling of MCF7 breast cancer cells in response to 5-Fluorouracil: Relationship with cell cycle changes and apoptosis, and identification of novel targets of p53.
Non-Affymetrix	Samples: 12	Analyses: 1	PMID: 16557594

Hernandez-Vargas_CellLine_2 Transcriptional profiling of MCF7 breast cancer cells in response to 5-Fluorouracil: Relationship with cell cycle changes and apoptosis, and identification of novel targets of p53.
Non-Affymetrix	Samples: 8	Analyses: 1	PMID: 16557594

Hernandez-Vargas_CellLine_3 Molecular profiling of docetaxel cytotoxicity in breast cancer cells: uncoupling of aberrant mitosis and apoptosis.
Non-Affymetrix	Samples: 31	Analyses: 5	PMID: 17099726

Huang_CellLine Identification of candidate molecular markers predicting sensitivity in solid tumors to dasatinib: rationale for patient selection.
Affymetrix	Samples: 23	Analyses: 1	PMID: 17332353

Ji_CellLine Comprehensive analysis of the gene expression profiles in human gastric cancer cell lines.
Non-Affymetrix	Samples: 27	Analyses: 6	PMID: 12226758

Shankavaram_CellLine Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study.
Affymetrix	Samples: 61	Analyses: 9	PMID: 17339364

Colon
Hong_Colon A susceptibility gene set for early onset colorectal cancer that integrates diverse signaling pathways: implication for tumorigenesis.
Affymetrix	Samples: 22	Analyses: 1	PMID: 17317818

Esophagus
Hao_Esophagus Gene Expression Profiling Reveals Stromal Genes Expressed in Common Between Barrett`s Esophagus and Adenocarcinoma.
Non-Affymetrix	Samples: 48	Analyses: 5	PMID: 16952561

Kimchi_Esophagus Progression of Barretts metaplasia to adenocarcinoma is associated with the suppression of the transcriptional programs of epidermal differentiation.
Affymetrix	Samples: 24	Analyses: 4	PMID: 15833844

Leukemia
Andersson_Leukemia Microarray-based classification of a consecutive series of 121 childhood acute leukemias: prediction of leukemic and genetic subtype as well as of minimal residual disease status.
Non-Affymetrix	Samples: 127	Analyses: 15	PMID: 17410184

Bhojwani_Leukemia Biologic pathways associated with relapse in childhood acute lymphoblastic leukemia: a Children`s Oncology Group study.
Affymetrix	Samples: 113	Analyses: 4	PMID: 16822902

Heuser_Leukemia Gene-expression profiles and their association with drug resistance in adult acute myeloid leukemia.
Non-Affymetrix	Samples: 35	Analyses: 11	PMID: 16266895

Muscle
Kang_Muscle Variations in gene expression among different types of human skeletal muscle.
Affymetrix	Samples: 35	Analyses: 9	PMID: 15962335

Normal
Roth_Normal Gene expression analyses reveal molecular relationships among 20 regions of the human CNS.
Affymetrix	Samples: 353	Analyses: 66	PMID: 16572319

Prostate
Oudes_Prostate Transcriptomes of human prostate cells.
Affymetrix	Samples: 20	Analyses: 4	PMID: 16638148

Rectum
deBruin_Rectum Macrodissection versus microdissection of rectal carcinoma: minor influence of stroma cells to tumor cell gene expression profiles.
Non-Affymetrix	Samples: 44	Analyses: 1	PMID: 16225673

Renal
Yang_Renal A molecular classification of papillary renal cell carcinoma.
Affymetrix	Samples: 34	Analyses: 6	PMID: 15994935