Data Details
Compendia Bioscience announces the addition of 29 carefully curated datasets to the Oncomine database. Nearly half contain data not found in GEO. Compendia thanks the many study authors who have helped clarify and add valuable supplementary data to these datasets in Oncomine.
Beroukhim Brain + 
Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma.
PMID: 18077431
| PNAS, 2007
| Samples: 186
Bhojwani Leukemia 2 +
Gene expression signatures predictive of early response and outcome in high-risk childhood acute lymphoblastic leukemia: A children's oncology group study.
PMID: 18802149
| J Clin Oncol, 2008 | Samples: 99
Chang CellLine 2 +
A genomic strategy to elucidate modules of oncogenic pathway signaling networks.
PMID: 19362539
| Mol Cell, 2009 | Samples: 25
Chen Brain +
Oncogenic mutations of ALK kinase in neuroblastoma.
PMID: 18923524
| Nature, 2008 | Samples: 239
Chiang Liver 2 +
Focal gains of VEGFA and molecular classification of hepatocellular carcinoma.
PMID: 18701503
| Cancer Res, 2008 | Samples: 197
Chng Lymphoma +
Gene expression profiling of pulmonary mucosa-associated lymphoid tissue lymphoma identifies new biologic insights with potential diagnostic and therapeutic applications.
PMID: 18974375
| Blood, 2009 | Samples: 35
Etemadmoghadam Ovarian
Integrated genome-wide DNA copy number and expression analysis identifies distinct mechanisms of primary chemoresistance in ovarian carcinomas.
PMID: 19193619
| Clin Cancer Res, 2009 | Samples: 118
Fabris Leukemia +
Molecular and transcriptional characterization of 17p loss in B-cell chronic lymphocytic leukemia.
PMID: 18521849
| Genes Chromosomes Cancer, 2008 | Samples: 60
Hensen Head-Neck +
Gene-expression of metastasized versus non-metastasized primary head and neck squamous cell carcinomas: a pathway-based analysis.
PMID: 18544165
| BMC Cancer, 2008 | Samples: 22
Januario CellLine
Gene expression changes upon expression of activated versions of MEK1 and HRAS in MCF10A cells.
GEO Series: GSE12764, 2009 | Samples: 17
Januario CellLine 2
Gene expression profiling of 51 human breast cancer cell lines.
GEO Series: GSE12777, 2009 | Samples: 51
Jia Liver +
Gene expression profiling reveals potential biomarkers of human hepatocellular carcinoma.
PMID: 17317821
| Clin Cancer Res, 2007 | Samples: 238
Kaiser Colon
Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer.
PMID: 17615082
| Genome Biol, 2007 | Samples: 105
Kloth CellLine
Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.
PMID: 17311676
| BMC Genomics, 2007 | Samples: 20
Kurashina Colon
Chromosome copy number analysis in screening for prognosis-related genomic regions in colorectal carcinoma.
PMID: 18564138
| Cancer Sci, 2008 | Samples: 188
Lopez-Bigas CellLine
Genome-wide analysis of the H3K4 histone demethylase RBP2 reveals a transcriptional program controlling differentiation.
PMID: 18722178
| Mol Cell, 2008 | Samples: 9
McKinnon Lung
The atypical Rho GTPase RhoBTB2 is required for expression of the chemokine CXCL14 in normal and cancerous epithelial cells.
PMID: 18762809
| Oncogene, 2008 | Samples: 10
Nakagawa Prostate
A Tissue Biomarker Panel Predicting Systemic Progression after PSA Recurrence Post-Definitive Prostate Cancer Therapy.
PMID: 18846227
| PLoS ONE, 2008 | Samples: 596
Nakagawa Prostate 2
A Tissue Biomarker Panel Predicting Systemic Progression after PSA Recurrence Post-Definitive Prostate Cancer Therapy.
PMID: 18846227
| PLoS ONE, 2008 | Samples: 596
Nakayama CellLine
Aberrant expression of Fra-2 promotes CCR4 expression and cell proliferation in adult T-cell leukemia.
PMID: 18071306
| Oncogene, 2008 | Samples: 8
Northcott Brain
Multiple recurrent genetic events converge on control of histone lysine methylation in medulloblastoma.
PMID: 19270706
| Nat Genet, 2009 | Samples: 89
Northcott Brain 2
Multiple recurrent genetic events converge on control of histone lysine methylation in medulloblastoma.
PMID: 19270706
| Nat Genet, 2009 | Samples: 123
Rohrbeck Lung
Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers.
PMID: 18992152
| J Transl Med, 2008 | Samples: 47
Schlingemann Head-Neck +
Patient-based cross-platform comparison of oligonucleotide microarray expression profiles.
PMID: 16205657
| Lab Invest, 2005 | Samples: 12
Sieben Ovarian +
Differential gene expression in ovarian tumors reveals Dusp 4 and Serpina 5 as key regulators for benign behavior of serous borderline tumors.
PMID: 16087957
| J Clin Oncol, 2005 | Samples: 39
Slebos Head-Neck +
Gene expression differences associated with human papillomavirus status in head and neck squamous cell carcinoma.
PMID: 16467079
| Clin Cancer Res, 2006 | Samples: 36
vanDoorn Lymphoma +
Oncogenomic analysis of mycosis fungoides reveals major differences with Sezary syndrome.
PMID: 18832135
| Blood, 2009 | Samples: 22
Yauch CellLine +
Epithelial versus mesenchymal phenotype determines in vitro sensitivity and predicts clinical activity of erlotinib in lung cancer patients.
PMID: 16361555
| Clin Cancer Res, 2005 | Samples: 42
Ye Head-Neck
Transcriptomic dissection of tongue squamous cell carcinoma.
PMID: 18254958
| BMC Genomics, 2008 | Samples: 38
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includes treatment response or drug sensitivity data